Palatoplasty in infants with cleft palate aims to reconstruct the intricate three-dimensional anatomy and restore the velopharyngeal function, which is essential for swallowing, speech, and ventilation of the middle ear through the opening of the Eustachian tube. The non-destructive analysis of the microarchitecture around the pterygoid hamulus using hard x-rays should enhance the existing knowledge from dissection and histological studies. Specifically, the micro-anatomical relationship between the palatine aponeurosis, the tendon of the tensor veli palatini muscle, and the pterygoid hamulus must be characterized to understand their structural relationship and functional implications. At the cellular level, the arrangement of fibers within muscle fascicles needs to be clarified. The right half of a historical plastinated infant cadaveric head was examined with two laboratory-based micro computed tomography (μCT) systems: phoenix|xray nanotom® m for imaging of the entire specimen with a pixel size of 55μm; and Zeiss Xradia 610 Versa for local tomography with a pixel size of 3.4μm. Using synchrotron radiation-based microtomography, additional measurements were performed with a pixel size of 3.24μm. The resulting images were rigidly registered and analyzed. Automated threshold-based segmentation of bones and manual segmentation of muscles, tendons, and aponeurosis, were performed to visualize their topographic relationships in three dimensions. An unstained segment of a human gracilis muscle was examined using the Exciscope Polaris with a pixel size of 0.35μm, and the fiber architecture was visually inspected. Laboratory-based x-ray μCT systems are suitable for virtual-histology examination of soft tissues and visualization of subcellular structures therein. Synchrotron radiation-based μCT with phase retrieval provided additional contrast within the plastinated soft tissues. The findings of this study support the hypothesis that the palatal muscles form a complex muscle sling around the pterygoid hamulus, underscoring the importance of preserving this bony protuberance during cleft palate repair.
X-ray phase-contrast tomography (X-PCT) techniques are capable of imaging samples with small differences in densities. They enable scientists to study biological or medical samples using high energy X-rays, which means less X-ray absorption and less sample damage, with high contrast quality. One branch of these techniques known as speckle-based methods have been well developed and demonstrated on real applications by different groups of developers using their own codes. However, there is lack of collective effort to package these methods into an open-source software which is easy-to-install, easy-to-use, well-documented, and optimized for speed. Such software is crucial to make the X-PCT techniques accessible to generic users and become regular tools. This report demonstrates the effort which implements speckle-based phase-retrieval methods in Python and GPU.
X-Ray parallel-beam micro-tomography systems at synchrotron facilities are mainly bespoke designs. Technical problems from a detector system can strongly affect the quality of reconstruction results. Radial lens distortion in the visible light optics causes streak artifacts which get stronger towards the edge of the image. The irregular response of the detector gives rise to a variety of stripe artifacts in the sonogram; full stripes, partial stripes, fluctuating stripes, and unresponsive stripes. These give rise to ring artifacts of different kinds in the reconstructed image. The scattering of the scintillation photons can cause artifacts which are similar to beam hardening artifacts and reduce the resolution of the image. Here we present our practical approaches to tackle each such problem. These approaches are easy to implement and have low computational cost. The algorithms are freely available as open-source software.
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